The objection sounds modern, but it isn't. People in the first century also knew that virgins don't give birth and the dead stay dead — that's precisely why the Resurrection was startling.
The philosophical confusion
Hume argued miracles are by definition violations of natural law, and uniform experience is against them. But as C.S. Lewis (and later John Lennox) showed, this begs the question: if you start by assuming miracles can't happen, no evidence will ever count. Lewis: "If we admit God, must we admit miracle? Indeed, indeed, you have no security against it."
What science actually says
Science studies regularities. It cannot pronounce on whether the Author of regularities can act freely within his story. John Lennox, an Oxford mathematician, points out that adding a chapter to a novel doesn't violate the rules of grammar — it uses them.
The Orthodox lens
For the Fathers, the deepest miracle is not the suspension of nature but its fulfillment. At Cana water becomes what wine was always meant to be. At Pascha death becomes the doorway to life. Creation is not violated; it is healed.
The honest question, then, is historical: did this particular miracle happen? On the Resurrection — the empty tomb, the appearances, the transformed disciples — the evidence is unusually strong (see our entry on the Resurrection).